Understandings and future challenges in soybean functional genomics and molecular breeding

Soybean (Glycine max) is a major source of plant protein and oil. Soybean breeding has benefited from advances in functional genomics. In particular, the release of soybean reference genomes has advanced our understanding of soybean adaptation to soil nutrient deficiencies, the molecular mechanism of symbiotic nitrogen (N) fixation, biotic and abiotic stress tolerance, and the roles of flowering time in regional adaptation, plant architecture, and seed yield and quality. Nevertheless, many challenges remain for soybean functional genomics and molecular breeding, mainly related to improving grain yield through high-density planting, maize–soybean intercropping, taking advantage of wild resources, utilization of heterosis, genomic prediction and selection breeding, and precise breeding through genome editing. This review summarizes the current progress in soybean functional genomics and directs future challenges for molecular breeding of soybean.     

丙泊酚联合七氟醚麻醉在先天性心脏病介入手术患儿中的心肌保护作用及对苏醒质量和应激反应的影响

摘要 目的：研究丙泊酚联合七氟醚麻醉在先天性心脏病介入手术患儿中的心肌保护作用及对苏醒质量和应激反应的影响。方法：选择2020年1月~2022年4月期间在苏州大学附属儿童医院接受先天性心脏病介入手术患儿96例,按照双色球法将患儿分为对照组（n=48,接受瑞芬太尼、丙泊酚麻醉）和观察组（n=48,接受丙泊酚、七氟醚麻醉）。对比两组患儿心率、呼吸频率、平均动脉压、苏醒质量、心肌损伤指标、应激反应指标和不良反应发生率。结果：两组置喉罩时（T1）~拔除喉罩（T4）时间点心率、呼吸频率、平均动脉压下降后升高,观察组高于对照组同时间点（P<0.05）。观察组的苏醒时间、拔管时间均短于对照组（P<0.05）。两组术毕、术后24 h肌酸磷酸激酶同工酶（CK-MB）、心肌肌钙蛋白（cTnI）升高后下降,观察组低于对照组同时间点（P<0.05）。两组术毕、术后24 h血糖、皮质醇升高后下降,观察组低于对照组同时间点（P<0.05）。两组不良反应发生率组间对比,差异不显著（P>0.05）。结论：丙泊酚联合七氟醚麻醉应用于先天性心脏病介入手术中,可减轻患儿的应激反应,稳定机体血流动力学波动,同时还可发挥心肌保护作用,提高苏醒质量。     

Comparison of mechanistic and hybrid modeling approaches for characterization of a CHO cultivation process: Requirements,pitfalls and solution paths

Despite the advantages of mathematical bioprocess modeling, successful model implementation already starts with experimental planning and accordingly can fail at this early stage. For this study, two different modeling approaches (mechanistic and hybrid) based on a four-dimensional antibody-producing CHO fed-batch process are compared. Overall, 33 experiments are performed in the fractional factorial four-dimensional design space and separated into four different complex data partitions subsequently used for model comparison and evaluation. The mechanistic model demonstrates the advantage of prior knowledge (i.e., known equations) to get informative value relatively independently of the utilized data partition. The hybrid approach displayes a higher data dependency but simultaneously yielded a higher accuracy on all data partitions. Furthermore, our results demonstrate that independent of the chosen modeling framework, a smart selection of only four initial experiments can already yield a very good representation of a full design space independent of the chosen modeling structure. Academic and industry researchers are recommended to pay more attention to experimental planning to maximize the process understanding obtained from mathematical modeling.     

Soil nutrient dissimilarity and litter nutrient limitation as major drivers of home field advantage in riparian tropical forests

Decomposition is a key process driving carbon and nutrient cycling in ecosystems worldwide. The home field advantage effect (HFA) has been found to accelerate decomposition rates when litter originates from “home” when compared to other (“away”) sites. It is still poorly known how HFA plays out in tropical, riparian forests, particularly in forests under restoration. We carried out three independent reciprocal litter transplant experiments to test how litter quality, soil nutrient concentrations, and successional stage (age) influenced HFA in tropical riparian forests. These experimental areas formed a wide gradient of soil and litter nutrients, which we used to evaluate the more general hypothesis that HFA varies with dissimilarity in soil nutrients and litter quality. We found that HFA increased with soil nutrient dissimilarity, suggesting that litter translocation uncouples relationships between decomposers and litter characteristics; and with litter N:P, indicating P limitation in this system. We also found negative HFA effects at a site under restoration that presented low decomposer ability, suggesting that forest restoration does not necessarily recover decomposer communities and nutrient cycling. Within each of the independent experiments, the occurrence of HFA effects was limited and their magnitude was not related to forest age, nor soil and litter quality. Our results imply that HFA effects in tropical ecosystems are influenced by litter nutrient limitation and soil nutrient dissimilarity between home and away sites, but to further disentangle major HFA drivers in tropical areas, a gradient of dissimilarity between litter and soil properties must be implemented in future experimental designs.     

不同空间尺度的景观格局对流溪河水质的影响

为探究不同空间尺度的景观格局对流溪河水质的影响,于2020年6月和2021年1月在流溪河干流15个采样点进行了水样的采集,测定了水温、溶解氧、pH、氨氮、硝态氮、硫酸盐和氯化物等水质指标。结合遥感解译所得的土地利用数据,提取了不同空间尺度(子流域和河岸带缓冲区)的景观格局指数,采用Bioenv分析、Mantle检验、方差分解和层次分割理论等方法揭示了景观格局对水质变化的影响。研究结果表明：氨氮是流溪河的主要污染物。土地利用结构与空间格局特征对水质的影响存在空间尺度效应。在100 m河岸带缓冲区,水域是影响水质的主要贡献源;而在其他空间尺度建设用地是影响水质的主要贡献源。在子流域尺度,林地和建设用地的斑块密度(PD指数)是影响水质变化的核心特征;而在河岸带缓冲区尺度,水域和建设用地的连通性(CONTAG指数)和林地的多样性(SHDI指数)是影响水质变化的关键特征。在各个空间尺度,土地利用与空间格局的交互作用对驱动水质变化起主导作用,尤其在1000 m河岸带缓冲区对水质的贡献率最高。因此,加强1000 m缓冲区尺度土地利用的管理和减少建设用地成片建设规划等对保护流域水质具有重要意义。     

宁夏银川平原沙化土地不同人工林土壤质量评价

沙化土地土壤贫瘠、生产力低,人工植被恢复是重要的土壤改良措施。为研究宁夏银川平原沙地不同人工林栽植对土壤的影响,以银川腹部沙地银川植物园沙化土壤恢复区的2017年3月种植的文冠果(Xanthoceras sorbifolium)和欧李(Cerasus humilis)人工林地为研究对象,以邻近的长期撂荒地为对照,对土壤质量进行了研究。2020年7—8月采集土样并测定了土壤物理、化学、生物学等20个指标作为土壤质量评价的总数据集,方差分析筛选出差异显著性的9个指标作为重要数据集指标,采用主成分分析法和Norm值建立土壤质量评价指标最小数据集(MDS),利用线性和非线性两种评分方法计算土壤质量指数(SQI)。结果表明：与长期撂荒地相比,银川平原沙化土壤恢复区人工文冠果、欧李林地的土壤理化性质较好,土壤砂粒百分比减少、粉粒和黏粒百分比有所增加,pH降低;有机质、全氮、全磷、全钾等主要养分指标提高,蔗糖酶、脲酶、纤维素酶等主要生物酶活性也高于撂荒地,筛选出的研究区土壤质量评价MDS指标为土壤粉粒百分比和全磷。2种评价方法下,文冠果和欧李人工恢复林地的SQI高于撂荒地,但提高不显著(P>0...     

基于土地利用变化的东海区大陆海岸带生境质量时空演变研究

人类活动对生态环境的影响主要表现为土地利用方式的变化。土地利用变化影响下的生境质量时空格局演变,对优化区域国土生态布局具有重要意义。利用DEM数据、气象数据、社会经济数据与1980、1990、2000、2010、2018年5期土地利用数据,通过InVEST模型、景观格局指数、地理探测器评估、描述、分析东海区大陆海岸带生境质量时空演变特征。结果表明：(1)1980—2018年东海区大陆海岸带陆地面积增加,土地利用中林地所占比重最大,耕地、建设用地面积变化最明显,2000—2010年土地利用转化最显著。土地变化北部大于南部、东侧大于西侧。(2)1980—2018年生境质量均值为0.75,总体生境质量较好,但呈下降趋势,2000—2010年生境质量下降最明显,2010年后下降速度减缓。生境质量斑块趋于破碎化、多样化、均匀化。(3)生境质量总体上从沿海向内陆下降,受岸线性质与围垦影响,北部生境质量由陆向海退化,南部生境退化沿海向陆推进。低等生境质量区呈现点—面—带的扩张趋势。(4)建设用地指数、高程、夜间灯光亮度、土壤类型、坡度为影响生境质量分布的主要因素,38年间主导因素由高程变为建设用地指...     

放牧对祁连山高寒典型草原土壤质量的影响

土壤质量是维持陆地生态系统稳定性与功能多样性的基础。放牧作为草地资源最广泛的利用方式之一,其对草地土壤质量的影响却缺乏量化标准,且两者之间的作用机理尚不明确。以祁连山高寒草原两个季节性牧场为研究对象,结合生态系统耦合与生态系统多功能性,探究了放牧对高寒草原土壤质量的影响与潜在机制。试验结果表明：基于最小数据集,不同放牧率下土壤质量指数差异显著(P<0.05),冬季牧场和春秋季牧场放牧率分别在2.45头月^-1 hm^-2和0.80头月^-1 hm^-2时土壤质量指数最高。土壤速效磷、有机碳、氮磷比和土壤pH是决定冬季牧场土壤质量的关键因子,而春秋季牧场中则是土壤有机碳、碳氮比和土壤pH;两个季节性牧场土壤质量指数与物种丰富度指数(P<0.05)和香浓维纳多样性指数(P<0.0001)呈显著正相关。高寒草原季节性牧场放牧地植物群落物种多样性与土壤因子耦合度在0.67—0.81之间,平均耦合度为0.74,属于中度协调;随着放牧率的增加,生态系统多功能性指数逐渐减低且与土壤质量指数变化趋势相似,...     

Progressive changes in the structure and dynamics of the phytoplankton community along a pollution gradient in a lowland river — a multivariate approach

The phytoplankton of the River Lujan (Buenos Aires, Argentina) was studied for a period of 18 months, together with physical and chemical variables, in relation to a pollution gradient. 167 taxa were recorded within a seasonal succession characterized by dominance of diatoms with a brief summer green algae facies. A combination of several biotic indices and multivariate analysis was employed to assess the impact of pollution on the phytoplankton community. The biotic indices used were species diversity and richness, algal quotients (green algae/diatom ratio, Centrales/Pennales ratio) and the SD succession rate index. Multivariate procedures included cluster analysis and ordination by PCA of both species and samples, stepwise discriminant analysis and multiple discriminant analysis of variance (MANOVA). Results indicate that community dynamism is attenuated at the more polluted sites, concomitant with an increased predominance of a broad-tolerance algal assemblage, co-dominated by Cyclotella meneghiniana and Nitzschia stagnorum. The changes in the community structure and dynamics described herein involved alterations in the distribution and relative proportions of the algae, rather than modifications in the basic species composition. These changes may not be readily detectable by methods which over-simplify the ecological information, such as systems of indicator species and biotic indices, designed to assess the degree of pollution. The suitability of multivariate analysis and biotic indices in river phytoplankton studies is further discussed.     

Effect of different seasons on concentration of plasma luteinizing hormone and seminal quality vis-à-vis freezability of buffalo bulls (Bubalus bubalis)

Seasonal variations in semen quality, freezability and plasma luteinizing hormone (LH) levels were studied between summer and spring. Semen volume, density and initial sperm motility did not differ significantly between different seasons. Plasma LH decreased between summer and spring but the differences were, however, not significant. Pre-freezing motility did not differ significantly but post-freezing motility varied significantly (P<0.01) between seasons. Post-freezing motility was lowest during summer and highest during winter. It can be concluded that summer spermatozoa may be fragile and cannot withstand freezing stress. To increase reproductive efficiency in buffalo during summer, semen should be frozen during winter and spring and used during hot weather conditions. Seasonal variations in plasma LH levels were insignificant.